FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008554579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008554579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728873
Total Bases27.6 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT90541.2421917124108042No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT55440.7606263368241106No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT29760.4083015834034187No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT28270.38785906461070724No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAA18440.2529933198238925No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT11850.16257976355277257No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCA11340.15558265980493172No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10880.14927154662060468No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTAT10730.14721357493006326No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG10450.14337202777438593No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC10290.14117685797114174No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA9500.13033820706762358No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCA9470.1299266127295153No Hit
AGATATAGTACCGCAAGGGAAAGATGAAAAATTATAAC9130.1252618768976214No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGC8610.1181275750370778No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG8390.11510921655761705No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCG8210.11263965052896732No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT8080.11085607506383142No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC7900.10838650903518172No Hit
ACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAG7870.10797491469707343No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT7820.10728892413355962No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG7450.10221259396355745No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC7340.10070341472382706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)