FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008554887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008554887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences583910
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT31680.5425493654844069No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT21560.36923498484355466No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT10800.18496001096059325No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT9570.16389512082341456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)