FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008555785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008555785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2095
Total Bases79.6 kbp
Sequences flagged as poor quality0
Sequence length38
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGAT1175.58472553699284No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT753.579952267303103No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT602.863961813842482No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGATCTC281.3365155131264916No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT231.097852028639618No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGATGTC211.0023866348448687No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT190.9069212410501194No Hit
ACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGT170.8114558472553699No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGAG140.6682577565632458No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT100.47732696897374705No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.42959427207637235No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGATCGC90.42959427207637235No Hit
ACACATCTCCGAGCCCACGAGACAGGATGTGATGTCGT90.42959427207637235No Hit
TTATACACATCTCCGAGCCCACGAGACAGGATGTGATG80.3818615751789976No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.3341288782816229No Hit
GTTATACAATCCTGAAGCAAAGCTGAAAAGAGTGTAAC50.23866348448687352No Hit
TCATTAGTGTTACTGTATTTTATGTGTGGTCTAAGACA50.23866348448687352No Hit
CTTCTAGACACTGGAAAAAGCAAGAAAATCTATTCTCC50.23866348448687352No Hit
ATACTAAAGAGAAGACAGGAAAACACCAGTAATGGTGA50.23866348448687352No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.23866348448687352No Hit
ACCTTACACAGCAAAAGGGACTTTGCAGATGTGATCAA50.23866348448687352No Hit
ATATATAACTAACTTTTGTAAATGCCCAATTAGCACTG40.1909307875894988No Hit
GTGTTTGGTTGCATGAATAATTTCTTTAGTGGTGATTT40.1909307875894988No Hit
GGGTGGGGGCTGCCCGGTTGAGATTTCCCGGCGGGTCC40.1909307875894988No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT40.1909307875894988No Hit
GTATCAACGCAGAGTACATGGGGGAAAGGAAATGAGGA40.1909307875894988No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAGAA40.1909307875894988No Hit
GTACATGGGGAGCCGCCTCGGCGTTCGAGCGGGGTGGG40.1909307875894988No Hit
CTACAATACTGGGGGAAAGGGCATAAAACACAAATTGA40.1909307875894988No Hit
GGGATAAACAGTAAGTATGATTATGTTTGAAATTGCAG30.1431980906921241No Hit
CTTATACACATCTCCGAGCCCACGAGACAGGATGAGAT30.1431980906921241No Hit
GAGTATATTCTCCATATAACCATAGACACAGAAAGAGG30.1431980906921241No Hit
CTGTTAAATAACCAAGTTCTTTTTTTTCTTTATCATCT30.1431980906921241No Hit
GTCCTAATTCCTGGAATATGAATACATTACCTTACACA30.1431980906921241No Hit
ACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGG30.1431980906921241No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGATCTG30.1431980906921241No Hit
GCTTTGCACCACCTTCTATGCCACCTTTTCTTGATCTA30.1431980906921241No Hit
ATACTGGGGGAAAGGGCATAAAACACAAATTGATTCTG30.1431980906921241No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGAGCTC30.1431980906921241No Hit
CGGTTATACAATCCTGAAGCAAAGCTGAAAAGAGTGTA30.1431980906921241No Hit
CTGTTAGGAAAAACAGAGATGTAGACAAAATAAAATTA30.1431980906921241No Hit
CTCTTGATCAGTTCCTTGGCTATGGCGATTCGTTCACA30.1431980906921241No Hit
GTCCAGCAGTCATTTTGTTACACTCTTTTCAGCTTTGC30.1431980906921241No Hit
TATACACATCTCCGAGCCCACGAGACAGGATGTGATGT30.1431980906921241No Hit
GTATGATTATGTTTGAAATTGCAGAAGCTGTTAGGAAA30.1431980906921241No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGAGGGC30.1431980906921241No Hit
GTATCAACGCAGAGTACATGGGGGCATGAACCAGGGAG30.1431980906921241No Hit
ACCCTGTCTTAAAGTTTGATTTCTCTTTAATCCAGGAT30.1431980906921241No Hit
GTCTTAAAGTTTGATTTCTCTTTAATCCAGGATTTTTT30.1431980906921241No Hit
GTGTTGATTCCATACAGTTTTTGTTCAGACAGGAAGGG30.1431980906921241No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT30.1431980906921241No Hit
CAGCAACAGTGGGGATCTAGAGGAGGATTTGCAGGAAG30.1431980906921241No Hit
AATAAACTCCATTCCAGTAAATGGTAAATACATAAAAA30.1431980906921241No Hit
CATTGGGCCTACTCAAATAATCTAGGAAAATCTCCCCA30.1431980906921241No Hit
GTATCAACGCAGAGTACTGTTTTTTTTTTTTTTTTTTT30.1431980906921241No Hit
CTTTTTACTTGTCTATTGCACAATTAAAAAGGTATGAC30.1431980906921241No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT30.1431980906921241No Hit
TATCAACGCAGAGTACATGGGGGAGACAGAGTATATTC30.1431980906921241No Hit
ATACACATCTCCGAGCCCACGAGACAGGATGTGATGGC30.1431980906921241No Hit
ACTGTGTAGTGCTGAATTTAATCTGAAAATCTGATGAT30.1431980906921241No Hit
CAGTAAGTATGATTATGTTTGAAATTGCAGAAGCTGTT30.1431980906921241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)