FastQCFastQC Report
Fri 8 Nov 2024
EGAF50000115970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF50000115970
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences529435
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT15550.293709331646No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT9910.1871806737370971No Hit
ATCCAGTACGGTGCCGATGGCATAAACCAGGAAAACTTAACTT7590.14336037473910868No Hit
TTTTTAGAGAGTCCACTGTTTCTGGAGGGAGATTAGGGTTTCT5520.10426209071935175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)