FastQCFastQC Report
Fri 8 Nov 2024
EGAF50000116507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF50000116507
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1034981
Total Bases44.5 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT48710.4706366590304556No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT35700.34493386835120643No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT18620.1799066842772959No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13050.12608927120401242No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11210.10831116706490264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)