FastQCFastQC Report
Wed 6 Nov 2024
EGAF50000118475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF50000118475
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences690525
Total Bases29.6 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT37980.5500162919517758No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT23720.34350675210890264No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC12320.17841497411389884No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT11650.1687122117229644No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTG11610.1681329423264907No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC11290.16349878715470112No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC11230.1626298830599906No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGG10670.15452011150935882No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAA8870.12845298866804244No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7890.11426088845443684No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCG7860.11382643640708158No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG7720.11179899351942363No Hit
CCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCA7610.11020600267912097No Hit
GTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAA7600.11006118533000253No Hit
ACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTT7330.10615111690380508No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCA7310.10586148220556822No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCAT7270.10528221280909453No Hit
GTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATT7230.10470294341262083No Hit
GATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCAC7140.10339958727055502No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG7070.10238586582672604No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG6990.10122732703377864No Hit
CCTTTAATAGCGGCTGCACCATCGGGATGTCCTGATCCAACAT6930.1003584229390681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)