FastQCFastQC Report
Sat 9 Nov 2024
EGAF50000120062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF50000120062
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences822769
Total Bases35.3 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT40030.4865278103574637No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT27360.3325356205690783No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT13020.15824611768309207No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10270.12482239851039599No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC9990.12141925619463056No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC9400.11424834917212487No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC8600.10452508541279508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)